PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0012s0500.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Dof
Protein Properties Length: 341aa    MW: 37282.1 Da    PI: 8.2048
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0012s0500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.92.6e-3949108261
                  zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                             +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk++
  SapurV1A.0012s0500.3.p  49 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRV 108
                             7899******************************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-3048107IPR003851Zinc finger, Dof-type
PfamPF027019.2E-3451107IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.52553107IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105591IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MLGNCEKMVV ISSTTNEWPQ NQIDEKSLME STSKLMERRG EEVLSQPQQQ QALKCPRCDS  60
SNTKFCYYNN YSLSQPRHFC KACKRYWTRG GTLRNVPVGG GCRKNKRVRR PASAVDGANN  120
SVSSANPNPQ TPTDPISSTS NHINPLFYGL TSSNPSEMDL SFTGRFNSRG YSAVSGYHDL  180
QPQLNSLALG FSSGIMSADH DANGFNHTKQ IQDVVTSNSL LSSYSNFFGS ATTSTNTTSP  240
TIASLLASSF NQQKSTTRAP NQYQSLTVPF EDLQMSGNSE SGIGVKGVKT EHDQNRSSWN  300
VPCQNQIEQV GFSDPSMYWN TTTSVGSWHD PANMGSSVLL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT1647380.0KT164738.1 Populus tomentosa clone Potom.011G26508 F-box family protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027799.10.0PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBLB9N3H41e-174B9N3H4_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05450.11e-174(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.14e-38Dof family protein